Software

Saguaro Biomolecular Simulation Package (Beta Version)

A suite of software tools written in FORTRAN for performing molecular dynamics and all-atom normal mode analysis on large molecules.


KFOLD

A program written in FORTRAN capable of simulating RNA folding kinetics on large RNAs (> 1000 nt).


RIBOSOME Translation Kinetics

A program written in FORTRAN capable of simulating Ribosome kinetics at a cellular level (>5000 mRNAs). RIBOSOME Translation Kinetics with mRNA co-translational folding

A program written in FORTRAN capable of simulating Ribosome kinetics on dynamic mRNAs.