If you really want to produce a top-quality thesis, an index is a definite
bonus. You need to use the makeidx package, and use the
\makeindex command in the preamble. Every word you want to be indexed
needs to have \index{Index_entry}. When you want your index to be
printed, just put \printindex.
makeidx package for this as well, and the
usage is almost identical to creating indices - just use \makeglossary
and \glossary instead.
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