home > book reviews > Paul S. Andrews
Google > Paul S. Andrews


Books

Short works

Books : reviews

Susan Stepney, Peter H. Welch, Paul S. Andrews, eds.
CoSMoS 2009.
Luniver Press. 2009

(read but not reviewed)

Contents

• Irun R. Cohen, David Harel. Two views of a Biology-Computer Science alliance. 2009
• Mark N. Read, Jonathan Timmis, Paul S. Andrews, Vipin Kumar. A domain model of Experimental Autoimmune Encephalomyelitis. 2009
• Andrew N. W. Hone. On non-standard numerical integration methods for biological oscillators. 2009
• Tim Hoverd, Susan Stepney. Environment Orientation: an architecture for simulating complex systems. 2009
• Anthony Nash, Sara Kalvala. A framework proposition fo cellular locality in Dictyostelium modelled in pi-calculus. 2009
• Teodor Ghetiu, Robert Alexander, Paul S. Andrews, Fiona Polack. Equivalence arguments for complex systems simulations -- a case-study. 2009

Paul S. Andrews, Jonathan Timmis, Nick D. L. Owens, Uwe Aickelin, Emma Hart, Andrew N. W. Hone, Andy M. Tyrrell.
ICARIS 2009: 8th International Conference on Artificial Immune Systems, York, UK.
Springer. 2009

(read but not reviewed)

Susan Stepney, Peter H. Welch, Paul S. Andrews, Adam T. Sampson, eds.
CoSMoS 2010.
Luniver Press. 2010

(read but not reviewed)

Contents

• Paul Humphreys. Some Relations between Formal Structure and Conceptual Content in Simulations. 2010
• Philip Garnett, Susan Stepney, Francesca Day, Ottoline Leyser. Using the CoSMoS Process to Enhance an Executable Model of Auxin Transport Canalisation. 2010
• Amineh Ghorbani, Andreas Ligtvoet, Igor Nikolic, Gerard Dijkema. Using Institutional Frameworks to Conceptualize Agent-based Models of Socio-technical Systems. 2010
• Fiona Polack. Arguing Validation of Simulations in Science. 2010
• William M. Stevens. Adapting Gosper's Hashlife Algorithm for Kinematic Environments. 2010
• Paul S. Andrews, Teodor Ghetiu, Tim Hoverd, Jenny Owen, Adam T. Sampson, Douglas N. Warren, Antonio Gomez Zamorano. A Reflection on Complex Systems: Interesting and Challenging. 2010
• Arturo Araujo, Peter J. Bentley, Buzz Baum. Modelling the Role of Chromosome Missegregation in Cancer Therapies. 2010
• Daniel Jones, Mark d'Inverno, Tim Blackwell. Agent-based Modelling of the Haematopoetic Cellular System. 2010

Susan Stepney, Peter H. Welch, Paul S. Andrews, Carl G. Ritson, eds.
CoSMoS 2011.
Luniver Press. 2011

(read but not reviewed)

Contents

• Paul S. Andrews, Susan Stepney, Tim Hoverd, Fiona Polack, Adam T. Sampson, Jonathan Timmis. CoSMoS process, models and metamodels. 2011
• Jose Evora, Enrique Kremers, Susana Morales Cuevo, Mario Hernandez, Jose Juan Hernandez, Pablo Viejo. Agent-based modelling of electrical load at household level. 2011
• Chris H. McEwan, Hugues Bersini, David Klatzmann, Vernique Thomas-Vaslin, Adrien Six. A computational technique to scale mathematical models towards complex heterogeneous systems. 2011
• Andrew Guest, James Bown, Andrew Sapeluk, Alan F. T. Winfield, Mark Shovman. Plotting a catchy tune: tracing sound meme evolution through visualisation. 2011
• Alastair Droop, Philip Garnett, Fiona Polack, Susan Stepney. Multiple model simulation: modeling cell division and differentiation in the prostate. 2011
• Fiona Polack, Alastair Droop, Philip Garnett, Teodor Ghetiu, Susan Stepney. Simulation validation: exploring the suitability of a simulation of cell division and differentiation in the prostate. 2011

Susan Stepney, Paul S. Andrews, Mark N. Read, eds.
CoSMoS 2012.
Luniver Press. 2012

(read but not reviewed)

Contents

• Paul S. Andrews, Susan Stepney, Jonathan Timmis. Simulation as a scientific instrument. 2012
• Jose Evora, Jose Juan Hernandez, Mario Hernandez, Enrique Kremers. Asynchronous smart grid simulations. 2012
• Philip Garnett. Going around again -- modelling standing ovations with a flexible agent-based simulaton framework. 2012
• Richard B. Greaves, Fiona Polack, John Forrester. CoSMoS in the context of socio-ecological systems research. 2012
• Susan Stepney. A pattern language for scientific simulations. 2012
• Alexey Goltsov, Gregory Goltsov, Adam T. Sampson. Simulating the effects of anticoagulant drugs upon blood clotting dynamics. 2012

Susan Stepney, Paul S. Andrews, eds.
CoSMoS 2013.
Luniver Press. 2013

(read but not reviewed)

Contents

• Katie Barr, Toby Fleming, Viv Kendon. Simulation methods for quantum walks on graphs applied to perfect state transfer and formal language recognition. 2013
• Jose Evora, Jose Juan Hernandez, Mario Hernandez. Decision support for Complex Systems: a Smart Grid case. 2013
• Peter Feher, Tamas Meszaros, Pieter J. Mosterman, Laszlo Lengyel. Flattening Virtual Simulink Subsystems with Graph Transformation. 2013
• Philip Garnett. Bursting a Bubble: Abstract Banking Demographics to Understand Tipping Points?. 2013
• Ye Li, Adam T. Sampson, James Bown, Yusuf Deeni. Understanding tissue morphology: model repurposing using the CoSMoS process. 2013
• Susan Stepney. CoSMoS simulation experiment reproducibility and the ODD protocol. 2013
• Li Tao, Jiming Liu. Understanding Self-Organized Regularities: AOC-Based Modeling of Complex Healthcare Systems. 2013

Susan Stepney, Paul S. Andrews, eds.
CoSMoS 2014.
Luniver Press. 2014

(read but not reviewed)

Contents

• Ali Afshar Dodson, Susan Stepney, Emma Uprichard, Leo S. D. Caves. Using the CoSMoS approach to study Schelling's Bounded Neighbourhood Model. 2014
• Bassant E. Youssef, Mohamed R. M. Rizk. Effect of Arriving Nodes Connection-Standards on Models for the Generation of Heterogeneous Complex Networks. 2014
• Peter Banda, Drew Blount, Christof Teuscher. COEL: A Web-based Chemistry Simulation Framework. 2014
• Paul S. Andrews, Susan Stepney. Using CoSMoS to Reverse Engineer a Domain Model for Aevol. 2014
• Stefan Leijnen, Joris Dormans. Order of Battle: A Case Study for Designing Emergent Structure in Games (abstract). 2014
• Fabio Mavelli, Emiliano Altamura, Pasquale Stano. In Silico Minimal Cell Model Systems (abstract). 2014

Susan Stepney, Paul S. Andrews, eds.
CoSMoS 2015.
Luniver Press. 2015

(read but not reviewed)

The study of complex systems is growing rapidly and modelling and simulation tools are an important part of the process.

This volume brings together work from a multidisciplinary group of scientists, who are studying a variety of techniques and applications for modelling and simulating complex systems.

Building on the success of previous CoSMoS workshops, these proceedings explore a range of modelling and simulation techniques together with a selection of complex systems case-studies.

Contents

• Paul S. Andrews, Susan Stepney. The CoSMoS Domain Experiment Model. 2015
• Keith De'Bell. Towards a Network Model of Community Empowerment for Public Health Outcomes. 2015
• Richard B. Greaves, Sabine Dietmann, Austin Smith, Susan Stepney, Julianne D. Halley. Genome-wide mouse embryonic stem cell regulatory network self-organisation. 2015
• Jose Juan Hernandez, Jose Evora, Enrique Kremers, Johannes Schauble. Action horizon: on the controllability of complex systems. 2015
• Sebastian von Mammen, Sarah Edenhofer, Jorg Hahner. CoSMoS in the Interactive Simulation Curriculum. 2015
• Richard A. Williams, Jonathan Timmis, Eva Qwarnstrom. Towards a Platform Model of the IL-1 Stimulated NF-kB Signalling Pathway using UML and Communicating Stream X-Machines. 2015

Susan Stepney, Fiona Polack, Kieran Alden, Paul S. Andrews, James Bown, Alastair Droop, Richard B. Greaves, Mark N. Read, Adam T. Sampson, Jonathan Timmis, Alan F. T. Winfield.
Engineering Simulations as Scientific Instruments: a pattern language.
Springer. 2018

+

(read but not reviewed)

This book describes CoSMoS (Complex Systems Modelling and Simulation), a pattern-based approach to engineering trustworthy simulations that are both scientifically useful to the researcher and scientifically credible to third parties. This approach emphasises three key aspects to this development of a simulation as a scientific instrument: the use of explicit models to capture the scientific domain, the engineered simulation platform, and the experimental results of running simulations; the use of arguments to provide evidence that the scientific instrument is fit for purpose; and the close co-working of domain scientists and simulation software engineers.

In Part I the authors provide a managerial overview: the rationale for and benefits of using the CoSMoS approach, and a small worked example to demonstrate it in action. Part II is a catalogue of the core patterns. Part III lists more specific “helper” patterns, showing possible routes to a simulation. Finally Part IV documents CellBranch, a substantial case study developed using the CoSMoS approach.